Get details about an Ensembl identifier

This function retrieves information about one or more Ensembl identifiers. Ensembl identifiers for which information is available are: genes, exons, transcripts and proteins.

get_id(id, verbose = FALSE, warnings = TRUE, progress_bar = TRUE)

Arguments

id	A character vector of Ensembl identifiers. Ensembl identifiers have the form ENS[species prefix][feature type prefix][a unique eleven digit number]. `id` should not contain NAs. Please note that while `'ENSG00000157764'` is a valid identifier as a query, `'ENSG00000157764.13'` is not.
verbose	Whether to be verbose about the http requests and respective responses' status.
warnings	Whether to show warnings.
progress_bar	Whether to show a progress bar.

Value

A tibble of 9 variables:

id: Ensembl identifier.
id_latest: Ensembl identifier including the version suffix.
type: Entity type: gene ('Gene'), exon ('Exon'), transcript ('Transcript'), and protein ('Translation').
id_version: Ensembl identifier version, indicates how many times that entity has changed during its time in Ensembl.
release: Ensembl release version.
is_current: Is this the latest identifier for the represented entity.
genome_assembly_name: Code name of the genome assembly.
peptide: TODO
possible_replacement: TODO

Examples

get_id(c('ENSDARE00000830915', 'ENSG00000248378', 'ENSDART00000033574', 'ENSP00000000233'))
#> # A tibble: 4 × 9
#>   id     id_latest  type  id_version release is_current genome_assembly… peptide
#>   <chr>  <chr>      <chr>      <int>   <int> <lgl>      <chr>            <chr>  
#> 1 ENSDA… ENSDARE00… Exon           1     104 TRUE       GRCz11           NA     
#> 2 ENSG0… ENSG00000… Gene           1     104 TRUE       GRCh38           NA     
#> 3 ENSDA… ENSDART00… Tran…          6     104 TRUE       GRCz11           NA     
#> 4 ENSP0… ENSP00000… Tran…          5     104 TRUE       GRCh38           NA     
#> # … with 1 more variable: possible_replacement <list>