Retrieves sample sets via the PGS Catalog REST API. The REST
API is queried multiple times with the criteria passed as arguments (see
below). By default all sample sets that match the criteria supplied in the
arguments are retrieved: this corresponds to the default option
set_operation
set to 'union'
. If you rather have only the
associations that match simultaneously all criteria provided, then set
set_operation
to 'intersection'
.
Usage
get_sample_sets(
pss_id = NULL,
pgs_id = NULL,
set_operation = "union",
interactive = TRUE,
verbose = FALSE,
warnings = TRUE,
progress_bar = TRUE
)
Arguments
- pss_id
A character vector of PGS Catalog sample sets accession identifiers.
- pgs_id
A
character
vector of PGS Catalog score accession identifiers.- set_operation
Either
'union'
or'intersection'
. This tells how performance metrics retrieved by different criteria should be combined:'union'
binds together all results removing duplicates and'intersection'
only keeps same sample sets found with different criteria.- interactive
A logical. If all sample sets are requested, whether to ask interactively if we really want to proceed.
- verbose
A
logical
indicating whether the function should be verbose about the different queries or not.- warnings
A
logical
indicating whether to print warnings, if any.- progress_bar
Whether to show a progress bar indicating download progress from the REST API server.
Value
A sample_sets object.