Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface
Source:R/open_in_pgs_catalog.R
open_in_pgs_catalog.Rd
This function launches the web browser and opens a tab for each identifier on the PGS Catalog web graphical user interface: https://www.pgscatalog.org/.
Usage
open_in_pgs_catalog(
identifier = NULL,
pgs_catalog_entity = c("pgs", "pgp", "pss", "efo")
)
Arguments
- identifier
A vector of identifiers. The identifiers can be: PGS, PGP, PSS or EFO identifiers.
- pgs_catalog_entity
Either
'pgs'
(default),'pgp'
,'pss'
,'efo'
. This argument indicates the type of the identifiers passed inidentifier
.
Value
Returns TRUE
if successful, or FALSE
otherwise. But
note that this function is run for its side effect.
Examples
if (FALSE) { # interactive()
# Open in PGS scores Catalog Web Graphical User Interface
open_in_pgs_catalog(c('PGS000001', 'PGS000002'))
# Open PGS Catalog Publications
open_in_pgs_catalog(c('PGP000001', 'PGP000002'),
pgs_catalog_entity = 'pgp')
# Open Sample Sets (PSS)
open_in_pgs_catalog(c('PSS000001', 'PSS000002'),
pgs_catalog_entity = 'pss')
# Open EFO traits (EFO)
open_in_pgs_catalog(c('EFO_0001645', 'MONDO_0007254'),
pgs_catalog_entity = 'efo')
}