Skip to contents

Map PGS identifiers to GWAS study identifiers. Retrieves GWAS study identifiers associated with samples used in the discovery stage of queried PGS identifiers.

Usage

pgs_to_study(
  pgs_id = NULL,
  verbose = FALSE,
  warnings = TRUE,
  progress_bar = TRUE
)

Arguments

pgs_id

A character vector of PGS Catalog score accession identifiers., e.g., "PGS000001". If NULL then returns results for all PGS identifiers in the Catalog.

verbose

A logical indicating whether the function should be verbose about the different queries or not.

warnings

A logical indicating whether to print warnings, if any.

progress_bar

Whether to show a progress bar as the queries are performed.

Value

A data frame of two columns: pgs_id and study_id.

Examples

if (FALSE) {
pgs_to_study('PGS000001')
# Unmappable pgs ids will be missing, e.g., PGS000023
pgs_to_study(c('PGS000013', 'PGS000023'))
}