An S4 class to represent a set of PGS Catalog Publications
Source:R/class-publications.R
publications-class.Rd
The publications object consists of two tables (slots), each a table that
combined form a relational database of a subset of PGS Catalog Publications.
Each publication is an observation (row) in the publications
table
(first table).
Slots
publications
A table of publications. Each publication (row) is uniquely identified by the
pgp_id
column. Columns:- pgp_id
PGS Publication identifier. Example:
"PGP000001"
.- pubmed_id
PubMed identifier. Example:
"25855707"
.- publication_date
Publication date. Example:
"2020-09-28"
. Note that the class ofpublication_date
isDate
.- publication
Abbreviated name of the journal. Example:
"Am J Hum Genet"
.- title
Publication title.
- author_fullname
First author of the publication. Example:
'Mavaddat N'
.- doi
Digital Object Identifier (DOI). This variable is also curated to allow unpublished work (e.g. preprints) to be added to the catalog. Example:
"10.1093/jnci/djv036"
.- authors
Concatenated list of all the publication authors.
pgs_ids
A table of publication and associated PGS identifiers. Columns:
- pgp_id
PGS Publication identifier. Example:
"PGP000001"
.- pgs_id
Polygenic Score (PGS) identifier.
- stage
PGS stage: either "gwas/dev" or "eval".