Function reference

DAEQTL mapping

daeqtl_mapping()

DAEQTL mapping

daeqtl_test()

DAEQTL test

daeqtl_plot()

DAEQTL plot

Importing utilities

read_candidate_snps()

Import DAEQTL candidates

read_dae_snps()

Import DAE SNPs

read_snp_pairs()

Import pairs of DAE and DAEQTL candidate SNPs

read_ae_ratios()

Import expression ratios

read_snp_genotypes()

Import SNP genotypes

read_snp_gen_positions()

Import SNP genomic positions

read_snp_zygosity()

Import SNP zygosity

Wrangling utilities

as_zygous()

Convert genotypes to zygosity

create_snp_table()

Create a SNP table

create_snp_pairs()

Create a table of SNP pairs

ae() ae_hom() ae_het()

Extract a vector of allelic expression ratios

is_hom() is_het()

Who are the homozygous/heterozygous samples?

M-values and Beta-values

m2b() b2m()

Convert M-values to Beta-values and back again

Other utilites

daeqtlr_example()

Get path to daeqtlr example